J3_6SPE_006
3D structure
- PDB id
- 6SPE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 30s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUUG*CAG*CUUACG
- Length
- 13 nucleotides
- Bulged bases
- 6SPE|1|a|C|1208
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SPE_006 not in the Motif Atlas
- Homologous match to J3_5J7L_007
- Geometric discrepancy: 0.1775
- The information below is about J3_5J7L_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82572.1
- Basepair signature
- cWW-tSH-tWW-F-cWW-tHW-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6SPE|1|a|C|984
6SPE|1|a|U|985
6SPE|1|a|U|986
6SPE|1|a|G|987
*
6SPE|1|a|C|1039
6SPE|1|a|A|1040
6SPE|1|a|G|1041
*
6SPE|1|a|C|1204
6SPE|1|a|U|1205
6SPE|1|a|U|1206
6SPE|1|a|A|1207
6SPE|1|a|C|1208
6SPE|1|a|G|1209
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain n
- 30S ribosomal protein S14
Coloring options: