J3_6SW9_005

3D structure

PDB id

6SW9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2A model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GCGAC*GAGAGGAG*CC(4AC)GAAAC

Length

21 nucleotides

Bulged bases

6SW9|1|2|A|1014

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SW9|1|2|G|962
6SW9|1|2|C|963
6SW9|1|2|G|964
6SW9|1|2|A|965
6SW9|1|2|C|966
*
6SW9|1|2|G|1008
6SW9|1|2|A|1009
6SW9|1|2|G|1010
6SW9|1|2|A|1011
6SW9|1|2|G|1012
6SW9|1|2|G|1013
6SW9|1|2|A|1014
6SW9|1|2|G|1015
*
6SW9|1|2|C|1182
6SW9|1|2|C|1183
6SW9|1|2|4AC|1184
6SW9|1|2|G|1185
6SW9|1|2|A|1186
6SW9|1|2|A|1187
6SW9|1|2|A|1188
6SW9|1|2|C|1189

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S14 type Z

Chain Z

30S ribosomal protein S3