J3_6SW9_009

3D structure

PDB id

6SW9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2A model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

(4AC)GACUAAG*CGCGA(A2M)ACCUC*GGGG

Length

23 nucleotides

Bulged bases

6SW9|1|2|A|59, 6SW9|1|2|U|377

QA status

Modified nucleotides: 4AC, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SW9|1|2|4AC|53
6SW9|1|2|G|54
6SW9|1|2|A|55
6SW9|1|2|C|56
6SW9|1|2|U|57
6SW9|1|2|A|58
6SW9|1|2|A|59
6SW9|1|2|G|60
*
6SW9|1|2|C|368
6SW9|1|2|G|369
6SW9|1|2|C|370
6SW9|1|2|G|371
6SW9|1|2|A|372
6SW9|1|2|A2M|373
6SW9|1|2|A|374
6SW9|1|2|C|375
6SW9|1|2|C|376
6SW9|1|2|U|377
6SW9|1|2|C|378
*
6SW9|1|2|G|401
6SW9|1|2|G|402
6SW9|1|2|G|403
6SW9|1|2|G|404

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain E

30S ribosomal protein S4e

Chain N

30S ribosomal protein S12