J3_6SW9_011

3D structure

PDB id

6SW9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2A model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CACUACAAG*CUAGUACC*GCGAAUACGUCCCUG

Length

32 nucleotides

Bulged bases

6SW9|1|2|U|906

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SW9|1|2|C|903
6SW9|1|2|A|904
6SW9|1|2|C|905
6SW9|1|2|U|906
6SW9|1|2|A|907
6SW9|1|2|C|908
6SW9|1|2|A|909
6SW9|1|2|A|910
6SW9|1|2|G|911
*
6SW9|1|2|C|1318
6SW9|1|2|U|1319
6SW9|1|2|A|1320
6SW9|1|2|G|1321
6SW9|1|2|U|1322
6SW9|1|2|A|1323
6SW9|1|2|C|1324
6SW9|1|2|C|1325
*
6SW9|1|2|G|1345
6SW9|1|2|C|1346
6SW9|1|2|G|1347
6SW9|1|2|A|1348
6SW9|1|2|A|1349
6SW9|1|2|U|1350
6SW9|1|2|A|1351
6SW9|1|2|C|1352
6SW9|1|2|G|1353
6SW9|1|2|U|1354
6SW9|1|2|C|1355
6SW9|1|2|C|1356
6SW9|1|2|C|1357
6SW9|1|2|U|1358
6SW9|1|2|G|1359

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 4

Transfer RNA; tRNA

Chain H

30S ribosomal protein S7

Chain K

30S ribosomal protein S9

Chain X

30S ribosomal protein S28e