J3_6SW9_012

3D structure

PDB id

6SW9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2A model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGUGGA*UAC*GGAAUC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SW9|1|2|G|913
6SW9|1|2|G|914
6SW9|1|2|U|915
6SW9|1|2|G|916
6SW9|1|2|G|917
6SW9|1|2|A|918
*
6SW9|1|2|U|1209
6SW9|1|2|A|1210
6SW9|1|2|C|1211
*
6SW9|1|2|G|1311
6SW9|1|2|G|1312
6SW9|1|2|A|1313
6SW9|1|2|A|1314
6SW9|1|2|U|1315
6SW9|1|2|C|1316

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 4

Transfer RNA; tRNA

Chain H

30S ribosomal protein S7

Chain K

30S ribosomal protein S9

Chain O

30S ribosomal protein S13

Chain U

30S ribosomal protein S19e