J3_6SWA_003

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCGCAGUCC*GUGCG*CGACGUC

Length

21 nucleotides

Bulged bases

6SWA|1|q|G|447, 6SWA|1|q|U|448

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWA|1|q|G|442
6SWA|1|q|C|443
6SWA|1|q|G|444
6SWA|1|q|C|445
6SWA|1|q|A|446
6SWA|1|q|G|447
6SWA|1|q|U|448
6SWA|1|q|C|449
6SWA|1|q|C|450
*
6SWA|1|q|G|692
6SWA|1|q|U|693
6SWA|1|q|G|694
6SWA|1|q|C|695
6SWA|1|q|G|696
*
6SWA|1|q|C|1275
6SWA|1|q|G|1276
6SWA|1|q|A|1277
6SWA|1|q|C|1278
6SWA|1|q|G|1279
6SWA|1|q|U|1280
6SWA|1|q|C|1281

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain E

60S ribosomal protein L6

Chain c

60S ribosomal protein L32

Chain d

60S ribosomal protein L35a

Chain p

60S ribosomal protein L28