J3_6SWA_014

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAU*GCUUCUG*CAAGG

Length

15 nucleotides

Bulged bases

6SWA|1|q|U|4949, 6SWA|1|q|A|5019

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWA|1|q|C|4928
6SWA|1|q|A|4929
6SWA|1|q|U|4930
*
6SWA|1|q|G|4944
6SWA|1|q|C|4945
6SWA|1|q|U|4946
6SWA|1|q|U|4947
6SWA|1|q|C|4948
6SWA|1|q|U|4949
6SWA|1|q|G|4950
*
6SWA|1|q|C|5017
6SWA|1|q|A|5018
6SWA|1|q|A|5019
6SWA|1|q|G|5020
6SWA|1|q|G|5021

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain B

60S ribosomal protein L3

Chain O

60S ribosomal protein L17

Chain b

60S ribosomal protein L31