Loop J3_6SWA

3D structure

PDB id: 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
Description: Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å

Loop

Sequence: GGGCCCAAGUCC*GAGGCCCAGCC*GGACGGUGUGAGGCCGGUAGCGGC
Length: 47 nucleotides
Bulged bases: 6SWA|1|q|C|212, 6SWA|1|q|C|213, 6SWA|1|q|C|214, 6SWA|1|q|A|215, 6SWA|1|q|U|228, 6SWA|1|q|G|229, 6SWA|1|q|U|230, 6SWA|1|q|G|241
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6SWA|1|q|G|188
6SWA|1|q|G|189
6SWA|1|q|G|190
6SWA|1|q|C|191
6SWA|1|q|C|192
6SWA|1|q|C|193
6SWA|1|q|A|194
6SWA|1|q|A|195
6SWA|1|q|G|196
6SWA|1|q|U|197
6SWA|1|q|C|198
6SWA|1|q|C|199
*
6SWA|1|q|G|208
6SWA|1|q|A|209
6SWA|1|q|G|210
6SWA|1|q|G|211
6SWA|1|q|C|212
6SWA|1|q|C|213
6SWA|1|q|C|214
6SWA|1|q|A|215
6SWA|1|q|G|216
6SWA|1|q|C|217
6SWA|1|q|C|218
*
6SWA|1|q|G|222
6SWA|1|q|G|223
6SWA|1|q|A|224
6SWA|1|q|C|225
6SWA|1|q|G|226
6SWA|1|q|G|227
6SWA|1|q|U|228
6SWA|1|q|G|229
6SWA|1|q|U|230
6SWA|1|q|G|231
6SWA|1|q|A|232
6SWA|1|q|G|233
6SWA|1|q|G|234
6SWA|1|q|C|235
6SWA|1|q|C|236
6SWA|1|q|G|237
6SWA|1|q|G|238
6SWA|1|q|U|239
6SWA|1|q|A|240
6SWA|1|q|G|241
6SWA|1|q|C|242
6SWA|1|q|G|243
6SWA|1|q|G|244
6SWA|1|q|C|245

Current chains

Chain q: 28S ribosomal RNA (3612-MER)

Nearby chains

Chain C: 60S ribosomal protein L4
Chain W: 60S ribosomal protein L26
Chain c: 60S ribosomal protein L32
Chain h: 60S ribosomal protein L37
Chain r: 5.8S ribosomal RNA; 5.8S rRNA

J3_6SWA_017