J3_6SWA_020

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACC*GAGGGAGCGAGACCCGUCGCCGC*GCACGGGGUC

Length

37 nucleotides

Bulged bases

6SWA|1|q|A|947, 6SWA|1|q|G|950, 6SWA|1|q|A|953, 6SWA|1|q|C|954, 6SWA|1|q|C|955, 6SWA|1|q|C|956, 6SWA|1|q|G|957, 6SWA|1|q|G|1264

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWA|1|q|G|701
6SWA|1|q|A|702
6SWA|1|q|C|703
6SWA|1|q|C|704
*
6SWA|1|q|G|942
6SWA|1|q|A|943
6SWA|1|q|G|944
6SWA|1|q|G|945
6SWA|1|q|G|946
6SWA|1|q|A|947
6SWA|1|q|G|948
6SWA|1|q|C|949
6SWA|1|q|G|950
6SWA|1|q|A|951
6SWA|1|q|G|952
6SWA|1|q|A|953
6SWA|1|q|C|954
6SWA|1|q|C|955
6SWA|1|q|C|956
6SWA|1|q|G|957
6SWA|1|q|U|958
6SWA|1|q|C|959
6SWA|1|q|G|960
6SWA|1|q|C|961
6SWA|1|q|C|962
6SWA|1|q|G|963
6SWA|1|q|C|964
*
6SWA|1|q|G|1260
6SWA|1|q|C|1261
6SWA|1|q|A|1262
6SWA|1|q|C|1263
6SWA|1|q|G|1264
6SWA|1|q|G|1265
6SWA|1|q|G|1266
6SWA|1|q|G|1267
6SWA|1|q|U|1268
6SWA|1|q|C|1269

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain C

60S ribosomal protein L4

Chain E

60S ribosomal protein L6

Chain F

60S ribosomal protein L7

Chain c

60S ribosomal protein L32

Chain d

60S ribosomal protein L35a

Chain p

60S ribosomal protein L28