J3_6SWA_022

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UU*AGAAGC*GUGGA

Length

13 nucleotides

Bulged bases

6SWA|1|q|A|1787, 6SWA|1|q|G|1816

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWA|1|q|U|1708
6SWA|1|q|U|1709
*
6SWA|1|q|A|1784
6SWA|1|q|G|1785
6SWA|1|q|A|1786
6SWA|1|q|A|1787
6SWA|1|q|G|1788
6SWA|1|q|C|1789
*
6SWA|1|q|G|1814
6SWA|1|q|U|1815
6SWA|1|q|G|1816
6SWA|1|q|G|1817
6SWA|1|q|A|1818

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain F

60S ribosomal protein L7

Chain R

60S ribosomal protein L21

Chain Z

60S ribosomal protein L29