J3_6SWA_024
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGGACG*CUCGGCCGAU
- Length
- 31 nucleotides
- Bulged bases
- 6SWA|1|q|C|2449, 6SWA|1|q|A|2451, 6SWA|1|q|G|2454, 6SWA|1|q|C|2484
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SWA|1|q|A|2430
6SWA|1|q|G|2431
6SWA|1|q|A|2432
6SWA|1|q|U|2433
6SWA|1|q|G|2434
6SWA|1|q|G|2435
*
6SWA|1|q|C|2444
6SWA|1|q|G|2445
6SWA|1|q|U|2446
6SWA|1|q|U|2447
6SWA|1|q|C|2448
6SWA|1|q|C|2449
6SWA|1|q|G|2450
6SWA|1|q|A|2451
6SWA|1|q|A|2452
6SWA|1|q|G|2453
6SWA|1|q|G|2454
6SWA|1|q|G|2455
6SWA|1|q|A|2456
6SWA|1|q|C|2457
6SWA|1|q|G|2458
*
6SWA|1|q|C|2478
6SWA|1|q|U|2479
6SWA|1|q|C|2480
6SWA|1|q|G|2481
6SWA|1|q|G|2482
6SWA|1|q|C|2483
6SWA|1|q|C|2484
6SWA|1|q|G|2485
6SWA|1|q|A|2486
6SWA|1|q|U|2487
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain G
- 60S ribosomal protein L7a
- Chain M
- 60S ribosomal protein L15
- Chain V
- 60S ribosomal protein L23a
- Chain h
- 60S ribosomal protein L37
- Chain r
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: