J3_6SWA_028
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUCGGUUG*CCCUUC*GCACCGCACGUUCGUGG
- Length
- 31 nucleotides
- Bulged bases
- 6SWA|1|q|U|4840, 6SWA|1|q|C|4895, 6SWA|1|q|A|4896, 6SWA|1|q|C|4897, 6SWA|1|q|C|4898, 6SWA|1|q|A|4901, 6SWA|1|q|C|4902, 6SWA|1|q|U|4908
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SWA|1|q|C|4709
6SWA|1|q|U|4710
6SWA|1|q|C|4711
6SWA|1|q|G|4712
6SWA|1|q|G|4713
6SWA|1|q|U|4714
6SWA|1|q|U|4715
6SWA|1|q|G|4716
*
6SWA|1|q|C|4836
6SWA|1|q|C|4837
6SWA|1|q|C|4838
6SWA|1|q|U|4839
6SWA|1|q|U|4840
6SWA|1|q|C|4841
*
6SWA|1|q|G|4894
6SWA|1|q|C|4895
6SWA|1|q|A|4896
6SWA|1|q|C|4897
6SWA|1|q|C|4898
6SWA|1|q|G|4899
6SWA|1|q|C|4900
6SWA|1|q|A|4901
6SWA|1|q|C|4902
6SWA|1|q|G|4903
6SWA|1|q|U|4904
6SWA|1|q|U|4905
6SWA|1|q|C|4906
6SWA|1|q|G|4907
6SWA|1|q|U|4908
6SWA|1|q|G|4909
6SWA|1|q|G|4910
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain E
- 60S ribosomal protein L6
- Chain L
- 60S ribosomal protein L14
- Chain N
- 60S ribosomal protein L13a
- Chain d
- 60S ribosomal protein L35a
Coloring options: