J3_6SWD_006

3D structure

PDB id

6SWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2 body model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGG*CUUGG*(4AC)GACG

Length

13 nucleotides

Bulged bases

6SWD|1|2|U|620

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWD|1|2|C|552
6SWD|1|2|G|553
6SWD|1|2|G|554
*
6SWD|1|2|C|618
6SWD|1|2|U|619
6SWD|1|2|U|620
6SWD|1|2|G|621
6SWD|1|2|G|622
*
6SWD|1|2|4AC|718
6SWD|1|2|G|719
6SWD|1|2|A|720
6SWD|1|2|C|721
6SWD|1|2|G|722

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain I

30S ribosomal protein S8

Chain N

30S ribosomal protein S12

Chain Q

30S ribosomal protein S15

Chain R

30S ribosomal protein S17

Chain W

30S ribosomal protein S27e