J3_6SWD_007
3D structure
- PDB id
- 6SWD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- IC2 body model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUAG*(4AC)GUAG*(4AC)GUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 6SWD|1|2|U|842, 6SWD|1|2|A|844
- QA status
- Modified nucleotides: 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SWD|1|2|C|793
6SWD|1|2|U|794
6SWD|1|2|A|795
6SWD|1|2|G|796
*
6SWD|1|2|4AC|828
6SWD|1|2|G|829
6SWD|1|2|U|830
6SWD|1|2|A|831
6SWD|1|2|G|832
*
6SWD|1|2|4AC|839
6SWD|1|2|G|840
6SWD|1|2|U|841
6SWD|1|2|U|842
6SWD|1|2|A|843
6SWD|1|2|A|844
6SWD|1|2|G|845
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain 5
- mRNA
- Chain B
- 30S ribosomal protein S2
- Chain C
- Zn-ribbon RNA-binding protein involved in translation
- Chain F
- 30S ribosomal protein S5
- Chain I
- 30S ribosomal protein S8
- Chain N
- 30S ribosomal protein S12
- Chain Q
- 30S ribosomal protein S15
- Chain W
- 30S ribosomal protein S27e
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