J3_6SWE_002

3D structure

PDB id

6SWE (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2 head of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUAAUUG*CGGGAACCUCAC*GGCUA

Length

25 nucleotides

Bulged bases

6SWE|1|2|G|946, 6SWE|1|2|G|948, 6SWE|1|2|A|950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWE|1|2|U|927
6SWE|1|2|U|928
6SWE|1|2|U|929
6SWE|1|2|A|930
6SWE|1|2|A|931
6SWE|1|2|U|932
6SWE|1|2|U|933
6SWE|1|2|G|934
*
6SWE|1|2|C|945
6SWE|1|2|G|946
6SWE|1|2|G|947
6SWE|1|2|G|948
6SWE|1|2|A|949
6SWE|1|2|A|950
6SWE|1|2|C|951
6SWE|1|2|C|952
6SWE|1|2|U|953
6SWE|1|2|C|954
6SWE|1|2|A|955
6SWE|1|2|C|956
*
6SWE|1|2|G|1195
6SWE|1|2|G|1196
6SWE|1|2|C|1197
6SWE|1|2|U|1198
6SWE|1|2|A|1199

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 6

Translation initiation factor 1A

Chain L

30S ribosomal protein S10

Chain O

30S ribosomal protein S13

Chain P

30S ribosomal protein S14 type Z

Chain T

30S ribosomal protein S19