J3_6SWE_003

3D structure

PDB id

6SWE (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2 head of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCGAC*GAGAGG*C(4AC)GAAAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWE|1|2|G|962
6SWE|1|2|C|963
6SWE|1|2|G|964
6SWE|1|2|A|965
6SWE|1|2|C|966
*
6SWE|1|2|G|1008
6SWE|1|2|A|1009
6SWE|1|2|G|1010
6SWE|1|2|A|1011
6SWE|1|2|G|1012
6SWE|1|2|G|1013
*
6SWE|1|2|C|1183
6SWE|1|2|4AC|1184
6SWE|1|2|G|1185
6SWE|1|2|A|1186
6SWE|1|2|A|1187
6SWE|1|2|A|1188
6SWE|1|2|C|1189

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S14 type Z