J3_6SWE_006

3D structure

PDB id

6SWE (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2 head of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAUG*CUCAGUUC*GCUG

Length

17 nucleotides

Bulged bases

6SWE|1|2|U|1214, 6SWE|1|2|U|1276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWE|1|2|C|1211
6SWE|1|2|A|1212
6SWE|1|2|A|1213
6SWE|1|2|U|1214
6SWE|1|2|G|1215
*
6SWE|1|2|C|1270
6SWE|1|2|U|1271
6SWE|1|2|C|1272
6SWE|1|2|A|1273
6SWE|1|2|G|1274
6SWE|1|2|U|1275
6SWE|1|2|U|1276
6SWE|1|2|C|1277
*
6SWE|1|2|G|1308
6SWE|1|2|C|1309
6SWE|1|2|U|1310
6SWE|1|2|G|1311

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain H

30S ribosomal protein S7

Chain O

30S ribosomal protein S13

Chain U

30S ribosomal protein S19e