J3_6SWE_012
3D structure
- PDB id
- 6SWE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- IC2 head of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- ACUACAAG*CUAGUACC*GCGAAUACGUCCCU
- Length
- 30 nucleotides
- Bulged bases
- 6SWE|1|2|U|906
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SWE|1|2|A|904
6SWE|1|2|C|905
6SWE|1|2|U|906
6SWE|1|2|A|907
6SWE|1|2|C|908
6SWE|1|2|A|909
6SWE|1|2|A|910
6SWE|1|2|G|911
*
6SWE|1|2|C|1318
6SWE|1|2|U|1319
6SWE|1|2|A|1320
6SWE|1|2|G|1321
6SWE|1|2|U|1322
6SWE|1|2|A|1323
6SWE|1|2|C|1324
6SWE|1|2|C|1325
*
6SWE|1|2|G|1345
6SWE|1|2|C|1346
6SWE|1|2|G|1347
6SWE|1|2|A|1348
6SWE|1|2|A|1349
6SWE|1|2|U|1350
6SWE|1|2|A|1351
6SWE|1|2|C|1352
6SWE|1|2|G|1353
6SWE|1|2|U|1354
6SWE|1|2|C|1355
6SWE|1|2|C|1356
6SWE|1|2|C|1357
6SWE|1|2|U|1358
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain 4
- initiator Met-tRNA fMet from E. coli (A1U72 variant)
- Chain H
- 30S ribosomal protein S7
- Chain K
- 30S ribosomal protein S9
- Chain L
- 30S ribosomal protein S10
- Chain U
- 30S ribosomal protein S19e
- Chain X
- 30S ribosomal protein S28e
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