J3_6SZS_003

3D structure

PDB id

6SZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6SZS|1|A|U|686, 6SZS|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SZS_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0569

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6SZS|1|A|U|683
6SZS|1|A|G|684
6SZS|1|A|A|685
6SZS|1|A|U|686
6SZS|1|A|C|687
6SZS|1|A|U|688
6SZS|1|A|A|689
*
6SZS|1|A|U|773
6SZS|1|A|G|774
6SZS|1|A|G|775
*
6SZS|1|A|C|791
6SZS|1|A|A|792
6SZS|1|A|A|793
6SZS|1|A|A|794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2