J3_6SZS_029

3D structure

PDB id

6SZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6SZS|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SZS_029 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0643

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6SZS|1|A|G|297
6SZS|1|A|G|298
6SZS|1|A|A|299
6SZS|1|A|A|300
6SZS|1|A|G|301
*
6SZS|1|A|C|316
6SZS|1|A|G|317
6SZS|1|A|C|318
6SZS|1|A|G|319
6SZS|1|A|A|320
6SZS|1|A|U|321
6SZS|1|A|A|322
6SZS|1|A|C|323
6SZS|1|A|A|324
6SZS|1|A|G|325
*
6SZS|1|A|C|337
6SZS|1|A|G|338
6SZS|1|A|U|339
6SZS|1|A|A|340
6SZS|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24