J3_6SZS_035

3D structure

PDB id

6SZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6SZS|1|a|U|1212, 6SZS|1|a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SZS_035 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1258

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6SZS|1|a|C|990
6SZS|1|a|U|991
6SZS|1|a|U|992
6SZS|1|a|G|993
6SZS|1|a|A|994
6SZS|1|a|C|995
6SZS|1|a|A|996
6SZS|1|a|U|997
*
6SZS|1|a|A|1044
6SZS|1|a|C|1045
6SZS|1|a|A|1046
6SZS|1|a|G|1047
*
6SZS|1|a|C|1210
6SZS|1|a|U|1211
6SZS|1|a|U|1212
6SZS|1|a|A|1213
6SZS|1|a|C|1214
6SZS|1|a|G|1215

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14

Chain z

Peptide chain release factor 2