J3_6T3N_001

3D structure

PDB id

6T3N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron G-mutant (C289G/C358G/G385C) in the presence of Na+, Mg2+ and 5'-exon

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

GAG*CGAAC*GC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6T3N_001 not in the Motif Atlas

Homologous match to J3_5J02_001

Geometric discrepancy: 0.1331

The information below is about J3_5J02_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6T3N|1|A|G|133
6T3N|1|A|A|134
6T3N|1|A|G|135
*
6T3N|1|A|C|141
6T3N|1|A|G|142
6T3N|1|A|A|143
6T3N|1|A|A|144
6T3N|1|A|C|145
*
6T3N|1|A|G|229
6T3N|1|A|C|230

Current chains

Chain A

Group IIC Intron Ribozyme

Nearby chains