J3_6T4Q_024
3D structure
- PDB id
- 6T4Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 6T4Q|1|C2|G|1199, 6T4Q|1|C2|G|1201
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6T4Q_024 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.0627
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6T4Q|1|C2|C|1180
6T4Q|1|C2|U|1181
6T4Q|1|C2|U|1182
6T4Q|1|C2|A|1183
6T4Q|1|C2|A|1184
6T4Q|1|C2|U|1185
6T4Q|1|C2|U|1186
6T4Q|1|C2|U|1187
*
6T4Q|1|C2|G|1198
6T4Q|1|C2|G|1199
6T4Q|1|C2|G|1200
6T4Q|1|C2|G|1201
6T4Q|1|C2|A|1202
6T4Q|1|C2|A|1203
6T4Q|1|C2|A|1204
6T4Q|1|C2|C|1205
6T4Q|1|C2|U|1206
6T4Q|1|C2|C|1207
6T4Q|1|C2|A|1208
6T4Q|1|C2|C|1209
*
6T4Q|1|C2|G|1454
6T4Q|1|C2|G|1455
6T4Q|1|C2|C|1456
6T4Q|1|C2|C|1457
6T4Q|1|C2|G|1458
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SP
- 40S ribosomal protein S15
- Chain SS
- 40S ribosomal protein S18-A
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29-A
- Chain Sf
- Ubiquitin-40S ribosomal protein S31
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