J3_6T4Q_036

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAGACAUGG*CUGG*CAUAAUG

Length

20 nucleotides

Bulged bases

6T4Q|1|C1|A|440, 6T4Q|1|C1|U|441

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6T4Q|1|C1|C|435
6T4Q|1|C1|A|436
6T4Q|1|C1|G|437
6T4Q|1|C1|A|438
6T4Q|1|C1|C|439
6T4Q|1|C1|A|440
6T4Q|1|C1|U|441
6T4Q|1|C1|G|442
6T4Q|1|C1|G|443
*
6T4Q|1|C1|C|492
6T4Q|1|C1|U|493
6T4Q|1|C1|G|494
6T4Q|1|C1|G|495
*
6T4Q|1|C1|C|618
6T4Q|1|C1|A|619
6T4Q|1|C1|U|620
6T4Q|1|C1|A|621
6T4Q|1|C1|A|622
6T4Q|1|C1|U|623
6T4Q|1|C1|G|624

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6-B

Chain LP

60S ribosomal protein L17-A

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L33-A