J3_6T4Q_042

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6T4Q|1|C2|A|213
6T4Q|1|C2|G|214
6T4Q|1|C2|A|215
6T4Q|1|C2|U|216
6T4Q|1|C2|A|217
6T4Q|1|C2|A|218
6T4Q|1|C2|A|219
6T4Q|1|C2|A|220
6T4Q|1|C2|A|221
6T4Q|1|C2|A|222
6T4Q|1|C2|U|223
6T4Q|1|C2|C|224
6T4Q|1|C2|A|225
6T4Q|1|C2|A|226
6T4Q|1|C2|U|227
6T4Q|1|C2|G|228
*
6T4Q|1|C2|C|237
6T4Q|1|C2|U|238
6T4Q|1|C2|C|239
6T4Q|1|C2|U|240
6T4Q|1|C2|U|241
6T4Q|1|C2|U|242
6T4Q|1|C2|G|243
*
6T4Q|1|C2|C|250
6T4Q|1|C2|A|251
6T4Q|1|C2|U|252

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SG

40S ribosomal protein S6-A

Chain SL

40S ribosomal protein S11-A