3D structure

PDB id
6T4Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
UGA*UAAUAG*CAUUA
Length
14 nucleotides
Bulged bases
6T4Q|1|C2|U|864
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6T4Q_043 not in the Motif Atlas
Homologous match to J3_8P9A_072
Geometric discrepancy: 0.0889
The information below is about J3_8P9A_072
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17385.4
Basepair signature
cWW-F-cWW-cWW-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

6T4Q|1|C2|U|633
6T4Q|1|C2|G|634
6T4Q|1|C2|A|635
*
6T4Q|1|C2|U|861
6T4Q|1|C2|A|862
6T4Q|1|C2|A|863
6T4Q|1|C2|U|864
6T4Q|1|C2|A|865
6T4Q|1|C2|G|866
*
6T4Q|1|C2|C|962
6T4Q|1|C2|A|963
6T4Q|1|C2|U|964
6T4Q|1|C2|U|965
6T4Q|1|C2|A|966

Current chains

Chain C2
18S rRNA

Nearby chains

Chain C1
Large subunit ribosomal RNA; LSU rRNA
Chain SH
40S ribosomal protein S7-A
Chain SL
40S ribosomal protein S11-A
Chain SN
40S ribosomal protein S13
Chain SW
40S ribosomal protein S22-A
Chain SX
40S ribosomal protein S23-A
Chain Sb
40S ribosomal protein S27-A

Coloring options:


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