J3_6T7T_040

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

6T7T|1|C2|U|227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6T7T|1|C2|A|213
6T7T|1|C2|G|214
6T7T|1|C2|A|215
6T7T|1|C2|U|216
6T7T|1|C2|A|217
6T7T|1|C2|A|218
6T7T|1|C2|A|219
6T7T|1|C2|A|220
6T7T|1|C2|A|221
6T7T|1|C2|A|222
6T7T|1|C2|U|223
6T7T|1|C2|C|224
6T7T|1|C2|A|225
6T7T|1|C2|A|226
6T7T|1|C2|U|227
6T7T|1|C2|G|228
*
6T7T|1|C2|C|237
6T7T|1|C2|U|238
6T7T|1|C2|C|239
6T7T|1|C2|U|240
6T7T|1|C2|U|241
6T7T|1|C2|U|242
6T7T|1|C2|G|243
*
6T7T|1|C2|C|250
6T7T|1|C2|A|251
6T7T|1|C2|U|252

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SG

40S ribosomal protein S6-A

Chain SL

40S ribosomal protein S11-A