J3_6T83_009

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAAAG*CUGAUAAC*GUC

Length

16 nucleotides

Bulged bases

6T83|1|1b|U|1840, 6T83|1|1b|A|1841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6T83|1|1b|G|1488
6T83|1|1b|A|1489
6T83|1|1b|A|1490
6T83|1|1b|A|1491
6T83|1|1b|G|1492
*
6T83|1|1b|C|1836
6T83|1|1b|U|1837
6T83|1|1b|G|1838
6T83|1|1b|A|1839
6T83|1|1b|U|1840
6T83|1|1b|A|1841
6T83|1|1b|A|1842
6T83|1|1b|C|1843
*
6T83|1|1b|G|1852
6T83|1|1b|U|1853
6T83|1|1b|C|1854

Current chains

Chain 1b

25S rRNA

Nearby chains

Chain 3b

5.8S ribosomal RNA; 5.8S rRNA

Chain gy

60S ribosomal protein L34-A

Chain jb

60S ribosomal protein L37-A

Chain lb

60S ribosomal protein L39