J3_6T83_013
3D structure
- PDB id
- 6T83 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 6T83|1|1b|G|2549, 6T83|1|1b|U|2550, 6T83|1|1b|U|2551, 6T83|1|1b|A|2554, 6T83|1|1b|U|2558, 6T83|1|1b|U|2559, 6T83|1|1b|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6T83_013 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.1438
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
6T83|1|1b|A|2529
6T83|1|1b|G|2530
6T83|1|1b|C|2531
6T83|1|1b|U|2532
*
6T83|1|1b|A|2547
6T83|1|1b|C|2548
6T83|1|1b|G|2549
6T83|1|1b|U|2550
6T83|1|1b|U|2551
6T83|1|1b|C|2552
6T83|1|1b|U|2553
6T83|1|1b|A|2554
6T83|1|1b|G|2555
6T83|1|1b|C|2556
6T83|1|1b|A|2557
6T83|1|1b|U|2558
6T83|1|1b|U|2559
6T83|1|1b|C|2560
6T83|1|1b|A|2561
6T83|1|1b|A|2562
6T83|1|1b|G|2563
*
6T83|1|1b|U|2578
6T83|1|1b|G|2579
6T83|1|1b|A|2580
6T83|1|1b|U|2581
Current chains
- Chain 1b
- 25S rRNA
Nearby chains
- Chain Ay
- 60S ribosomal protein L2-A
- Chain Gy
- 60S ribosomal protein L8-A
- Chain Xy
- 60S ribosomal protein L25
- Chain Zy
- 60S ribosomal protein L27-A
- Chain cy
- 60S ribosomal protein L30
- Chain gy
- 60S ribosomal protein L34-A
- Chain pb
- 60S ribosomal protein L43-A
Coloring options: