J3_6T83_076

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AC*GGACUA*UGGAAGUUU

Length

17 nucleotides

Bulged bases

6T83|1|2b|U|1390, 6T83|1|2b|U|1413, 6T83|1|2b|U|1414

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6T83|1|2b|A|1337
6T83|1|2b|C|1338
*
6T83|1|2b|G|1386
6T83|1|2b|G|1387
6T83|1|2b|A|1388
6T83|1|2b|C|1389
6T83|1|2b|U|1390
6T83|1|2b|A|1391
*
6T83|1|2b|U|1407
6T83|1|2b|G|1408
6T83|1|2b|G|1409
6T83|1|2b|A|1410
6T83|1|2b|A|1411
6T83|1|2b|G|1412
6T83|1|2b|U|1413
6T83|1|2b|U|1414
6T83|1|2b|U|1415

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Fb

Rps5p

Chain Qb

40S ribosomal protein S16-A

Chain Rb

40S ribosomal protein S17-B

Chain gb

Guanine nucleotide-binding protein subunit beta-like protein