J3_6T83_080

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAUGAAAAGAAC*GAGUGAAAAAGUACG*CUC

Length

30 nucleotides

Bulged bases

6T83|1|Aa|A|398, 6T83|1|Aa|A|402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6T83|1|Aa|G|368
6T83|1|Aa|A|369
6T83|1|Aa|U|370
6T83|1|Aa|G|371
6T83|1|Aa|A|372
6T83|1|Aa|A|373
6T83|1|Aa|A|374
6T83|1|Aa|A|375
6T83|1|Aa|G|376
6T83|1|Aa|A|377
6T83|1|Aa|A|378
6T83|1|Aa|C|379
*
6T83|1|Aa|G|390
6T83|1|Aa|A|391
6T83|1|Aa|G|392
6T83|1|Aa|U|393
6T83|1|Aa|G|394
6T83|1|Aa|A|395
6T83|1|Aa|A|396
6T83|1|Aa|A|397
6T83|1|Aa|A|398
6T83|1|Aa|A|399
6T83|1|Aa|G|400
6T83|1|Aa|U|401
6T83|1|Aa|A|402
6T83|1|Aa|C|403
6T83|1|Aa|G|404
*
6T83|1|Ca|C|19
6T83|1|Ca|U|20
6T83|1|Ca|C|21

Current chains

Chain Aa

25S rRNA

Chain Ca

5.8S rRNA

Nearby chains

Chain A

60S ribosomal protein L17-A

Chain Fa

60S ribosomal protein L4-A

Chain J

60S ribosomal protein L26-A

Chain W

60S ribosomal protein L39