J3_6T83_083

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGUAAAAGCCCCCUUG*CC*GUGGC

Length

23 nucleotides

Bulged bases

6T83|1|Aa|A|2703, 6T83|1|Aa|U|2752

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6T83|1|Aa|G|2699
6T83|1|Aa|G|2700
6T83|1|Aa|U|2701
6T83|1|Aa|A|2702
6T83|1|Aa|A|2703
6T83|1|Aa|A|2704
6T83|1|Aa|A|2705
6T83|1|Aa|G|2706
6T83|1|Aa|C|2707
6T83|1|Aa|C|2708
6T83|1|Aa|C|2709
6T83|1|Aa|C|2710
6T83|1|Aa|C|2711
6T83|1|Aa|U|2712
6T83|1|Aa|U|2713
6T83|1|Aa|G|2714
*
6T83|1|Aa|C|2741
6T83|1|Aa|C|2742
*
6T83|1|Aa|G|2751
6T83|1|Aa|U|2752
6T83|1|Aa|G|2753
6T83|1|Aa|G|2754
6T83|1|Aa|C|2755

Current chains

Chain Aa

25S rRNA

Nearby chains

Chain Bb

5S ribosomal RNA; 5S rRNA

Chain E

60S ribosomal protein L21-A

Chain Ga

60S ribosomal protein L5

Chain Ma

60S ribosomal protein L11-A

Chain Z

60S ribosomal protein L42-A