J3_6T83_087

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

6T83|1|a|A|217, 6T83|1|a|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6T83|1|a|A|213
6T83|1|a|G|214
6T83|1|a|A|215
6T83|1|a|U|216
6T83|1|a|A|217
6T83|1|a|A|218
6T83|1|a|A|219
6T83|1|a|A|220
6T83|1|a|A|221
6T83|1|a|A|222
6T83|1|a|U|223
6T83|1|a|C|224
6T83|1|a|A|225
6T83|1|a|A|226
6T83|1|a|U|227
6T83|1|a|G|228
*
6T83|1|a|C|237
6T83|1|a|U|238
6T83|1|a|C|239
6T83|1|a|U|240
6T83|1|a|U|241
6T83|1|a|U|242
6T83|1|a|G|243
*
6T83|1|a|C|250
6T83|1|a|A|251
6T83|1|a|U|252

Current chains

Chain a

18S rRNA

Nearby chains

Chain f

40S ribosomal protein S4-A

Chain h

40S ribosomal protein S6-A

Chain j

40S ribosomal protein S8-A

Chain m

40S ribosomal protein S11-A