J3_6TB3_032

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

6TB3|1|2|U|238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TB3|1|2|A|213
6TB3|1|2|G|214
6TB3|1|2|A|215
6TB3|1|2|U|216
6TB3|1|2|A|217
6TB3|1|2|A|218
6TB3|1|2|A|219
6TB3|1|2|A|220
6TB3|1|2|A|221
6TB3|1|2|A|222
6TB3|1|2|U|223
6TB3|1|2|C|224
6TB3|1|2|A|225
6TB3|1|2|A|226
6TB3|1|2|U|227
6TB3|1|2|G|228
*
6TB3|1|2|C|237
6TB3|1|2|U|238
6TB3|1|2|C|239
6TB3|1|2|U|240
6TB3|1|2|U|241
6TB3|1|2|U|242
6TB3|1|2|G|243
*
6TB3|1|2|C|250
6TB3|1|2|A|251
6TB3|1|2|U|252

Current chains

Chain 2

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain T

40S ribosomal protein S6-A

Chain X

40S ribosomal protein S11-A