3D structure

PDB id
6TB3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CGAUAGCGAACAAGUAC*GGAAAG*CUUG
Length
27 nucleotides
Bulged bases
6TB3|1|BQ|U|343, 6TB3|1|BQ|A|351, 6TB3|1|BS|U|23
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6TB3_037 not in the Motif Atlas
Homologous match to J3_8P9A_045
Geometric discrepancy: 0.0466
The information below is about J3_8P9A_045
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

6TB3|1|BQ|C|340
6TB3|1|BQ|G|341
6TB3|1|BQ|A|342
6TB3|1|BQ|U|343
6TB3|1|BQ|A|344
6TB3|1|BQ|G|345
6TB3|1|BQ|C|346
6TB3|1|BQ|G|347
6TB3|1|BQ|A|348
6TB3|1|BQ|A|349
6TB3|1|BQ|C|350
6TB3|1|BQ|A|351
6TB3|1|BQ|A|352
6TB3|1|BQ|G|353
6TB3|1|BQ|U|354
6TB3|1|BQ|A|355
6TB3|1|BQ|C|356
*
6TB3|1|BQ|G|363
6TB3|1|BQ|G|364
6TB3|1|BQ|A|365
6TB3|1|BQ|A|366
6TB3|1|BQ|A|367
6TB3|1|BQ|G|368
*
6TB3|1|BS|C|21
6TB3|1|BS|U|22
6TB3|1|BS|U|23
6TB3|1|BS|G|24

Current chains

Chain BQ
25S rRNA
Chain BS
5.8S rRNA

Nearby chains

Chain AF
60S ribosomal protein L37-A
Chain AK
60S ribosomal protein L26-A
Chain AL
60S ribosomal protein L39
Chain BE
60S ribosomal protein L4-A

Coloring options:


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