J3_6TB3_038
3D structure
- PDB id
- 6TB3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 6TB3|1|BQ|A|398, 6TB3|1|BQ|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6TB3_038 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.0738
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
6TB3|1|BQ|A|369
6TB3|1|BQ|U|370
6TB3|1|BQ|G|371
6TB3|1|BQ|A|372
6TB3|1|BQ|A|373
6TB3|1|BQ|A|374
6TB3|1|BQ|A|375
6TB3|1|BQ|G|376
6TB3|1|BQ|A|377
6TB3|1|BQ|A|378
6TB3|1|BQ|C|379
*
6TB3|1|BQ|G|390
6TB3|1|BQ|A|391
6TB3|1|BQ|G|392
6TB3|1|BQ|U|393
6TB3|1|BQ|G|394
6TB3|1|BQ|A|395
6TB3|1|BQ|A|396
6TB3|1|BQ|A|397
6TB3|1|BQ|A|398
6TB3|1|BQ|A|399
6TB3|1|BQ|G|400
6TB3|1|BQ|U|401
6TB3|1|BQ|A|402
6TB3|1|BQ|C|403
6TB3|1|BQ|G|404
*
6TB3|1|BS|C|19
6TB3|1|BS|U|20
Current chains
- Chain BQ
- 25S rRNA
- Chain BS
- 5.8S rRNA
Nearby chains
- Chain AK
- 60S ribosomal protein L26-A
- Chain AL
- 60S ribosomal protein L39
- Chain AX
- 60S ribosomal protein L17-A
- Chain BE
- 60S ribosomal protein L4-A
Coloring options: