J3_6TBV_001
3D structure
- PDB id
- 6TBV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 6TBV|1|05S1|U|14, 6TBV|1|05S1|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6TBV_001 not in the Motif Atlas
- Homologous match to J3_5J7L_049
- Geometric discrepancy: 0.0726
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6TBV|1|05S1|G|10
6TBV|1|05S1|C|11
6TBV|1|05S1|C|12
6TBV|1|05S1|G|13
6TBV|1|05S1|U|14
6TBV|1|05S1|A|15
6TBV|1|05S1|G|16
*
6TBV|1|05S1|C|68
6TBV|1|05S1|G|69
6TBV|1|05S1|C|70
*
6TBV|1|05S1|G|106
6TBV|1|05S1|G|107
6TBV|1|05S1|A|108
6TBV|1|05S1|A|109
6TBV|1|05S1|C|110
Current chains
- Chain 05S1
- 5S rRNA
Nearby chains
- Chain 23S1
- Large subunit ribosomal RNA; LSU rRNA
- Chain L181
- 50S ribosomal protein L18
- Chain L251
- 50S ribosomal protein L25
- Chain L271
- 50S ribosomal protein L27
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