J3_6TBV_016

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6TBV|1|23S1|U|686, 6TBV|1|23S1|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TBV_016 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0577

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6TBV|1|23S1|U|683
6TBV|1|23S1|G|684
6TBV|1|23S1|A|685
6TBV|1|23S1|U|686
6TBV|1|23S1|C|687
6TBV|1|23S1|U|688
6TBV|1|23S1|A|689
*
6TBV|1|23S1|U|773
6TBV|1|23S1|G|774
6TBV|1|23S1|G|775
*
6TBV|1|23S1|C|791
6TBV|1|23S1|A|792
6TBV|1|23S1|A|793
6TBV|1|23S1|A|794

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L021

50S ribosomal protein L2

Chain L041

50S ribosomal protein L4

Chain L341

50S ribosomal protein L34

Chain SPE1

SpeFL