J3_6TBV_024

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

6TBV|1|23S1|A|2518, 6TBV|1|23S1|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TBV_024 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0676

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

6TBV|1|23S1|C|2517
6TBV|1|23S1|A|2518
6TBV|1|23S1|U|2519
6TBV|1|23S1|C|2520
*
6TBV|1|23S1|G|2545
6TBV|1|23S1|U|2546
6TBV|1|23S1|A|2547
*
6TBV|1|23S1|U|2561
6TBV|1|23S1|U|2562
6TBV|1|23S1|U|2563
6TBV|1|23S1|A|2564
6TBV|1|23S1|A|2565
6TBV|1|23S1|A|2566
6TBV|1|23S1|G|2567

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L031

50S ribosomal protein L3

Chain L141

50S ribosomal protein L14