J3_6TBV_029

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6TBV|1|16S1|U|1212, 6TBV|1|16S1|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TBV_029 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1205

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6TBV|1|16S1|C|990
6TBV|1|16S1|U|991
6TBV|1|16S1|U|992
6TBV|1|16S1|G|993
6TBV|1|16S1|A|994
6TBV|1|16S1|C|995
6TBV|1|16S1|A|996
6TBV|1|16S1|U|997
*
6TBV|1|16S1|A|1044
6TBV|1|16S1|C|1045
6TBV|1|16S1|A|1046
6TBV|1|16S1|G|1047
*
6TBV|1|16S1|C|1210
6TBV|1|16S1|U|1211
6TBV|1|16S1|U|1212
6TBV|1|16S1|A|1213
6TBV|1|16S1|C|1214
6TBV|1|16S1|G|1215

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S141

30S ribosomal protein S14