J3_6TBV_030

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAGUUUUC*GAGAAUGUGCC*GGAAC

Length

25 nucleotides

Bulged bases

6TBV|1|16S1|U|1025

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TBV|1|16S1|G|1003
6TBV|1|16S1|A|1004
6TBV|1|16S1|A|1005
6TBV|1|16S1|G|1006
6TBV|1|16S1|U|1007
6TBV|1|16S1|U|1008
6TBV|1|16S1|U|1009
6TBV|1|16S1|U|1010
6TBV|1|16S1|C|1011
*
6TBV|1|16S1|G|1018
6TBV|1|16S1|A|1019
6TBV|1|16S1|G|1020
6TBV|1|16S1|A|1021
6TBV|1|16S1|A|1022
6TBV|1|16S1|U|1023
6TBV|1|16S1|G|1024
6TBV|1|16S1|U|1025
6TBV|1|16S1|G|1026
6TBV|1|16S1|C|1027
6TBV|1|16S1|C|1028
*
6TBV|1|16S1|G|1033
6TBV|1|16S1|G|1034
6TBV|1|16S1|A|1035
6TBV|1|16S1|A|1036
6TBV|1|16S1|C|1037

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S141

30S ribosomal protein S14

Chain S191

30S ribosomal protein S19