J3_6TBV_035

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6TBV|1|23S1|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TBV_035 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0504

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6TBV|1|23S1|G|297
6TBV|1|23S1|G|298
6TBV|1|23S1|A|299
6TBV|1|23S1|A|300
6TBV|1|23S1|G|301
*
6TBV|1|23S1|C|316
6TBV|1|23S1|G|317
6TBV|1|23S1|C|318
6TBV|1|23S1|G|319
6TBV|1|23S1|A|320
6TBV|1|23S1|U|321
6TBV|1|23S1|A|322
6TBV|1|23S1|C|323
6TBV|1|23S1|A|324
6TBV|1|23S1|G|325
*
6TBV|1|23S1|C|337
6TBV|1|23S1|G|338
6TBV|1|23S1|U|339
6TBV|1|23S1|A|340
6TBV|1|23S1|C|341

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L041

50S ribosomal protein L4

Chain L241

50S ribosomal protein L24