J3_6TH6_006

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

UUUAAUU(OMG)G*CCGGGAACCUCAC*GGCUA

Length

27 nucleotides

Bulged bases

6TH6|1|Aa|G|925, 6TH6|1|Aa|G|927, 6TH6|1|Aa|A|929

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TH6|1|Aa|U|906
6TH6|1|Aa|U|907
6TH6|1|Aa|U|908
6TH6|1|Aa|A|909
6TH6|1|Aa|A|910
6TH6|1|Aa|U|911
6TH6|1|Aa|U|912
6TH6|1|Aa|OMG|913
6TH6|1|Aa|G|914
*
6TH6|1|Aa|C|923
6TH6|1|Aa|C|924
6TH6|1|Aa|G|925
6TH6|1|Aa|G|926
6TH6|1|Aa|G|927
6TH6|1|Aa|A|928
6TH6|1|Aa|A|929
6TH6|1|Aa|C|930
6TH6|1|Aa|C|931
6TH6|1|Aa|U|932
6TH6|1|Aa|C|933
6TH6|1|Aa|A|934
6TH6|1|Aa|C|935
*
6TH6|1|Aa|G|1173
6TH6|1|Aa|G|1174
6TH6|1|Aa|C|1175
6TH6|1|Aa|U|1176
6TH6|1|Aa|A|1177

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Al

30S ribosomal protein S9

Chain Am

30S ribosomal protein S10

Chain Ap

30S ribosomal protein S13

Chain Ar

30S ribosomal protein S14 type Z

Chain Au

30S ribosomal protein S19