J3_6TH6_034

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CGAAG*CGCCGGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

6TH6|1|BA|G|360

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TH6_034 not in the Motif Atlas

Geometric match to J3_5J7L_068

Geometric discrepancy: 0.1035

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6TH6|1|BA|C|335
6TH6|1|BA|G|336
6TH6|1|BA|A|337
6TH6|1|BA|A|338
6TH6|1|BA|G|339
*
6TH6|1|BA|C|355
6TH6|1|BA|G|356
6TH6|1|BA|C|357
6TH6|1|BA|C|358
6TH6|1|BA|G|359
6TH6|1|BA|G|360
6TH6|1|BA|A|361
6TH6|1|BA|G|362
6TH6|1|BA|A|363
6TH6|1|BA|G|364
*
6TH6|1|BA|C|376
6TH6|1|BA|G|377
6TH6|1|BA|U|378
6TH6|1|BA|A|379
6TH6|1|BA|G|380

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BX

50S ribosomal protein L24