J3_6TNN_003

3D structure

PDB id

6TNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

6TNN|1|U|U|299

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TNN_003 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.1462

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6TNN|1|U|C|270
6TNN|1|U|A|271
6TNN|1|U|A|272
6TNN|1|U|A|273
6TNN|1|U|C|274
*
6TNN|1|U|G|293
6TNN|1|U|G|294
6TNN|1|U|G|295
6TNN|1|U|U|296
6TNN|1|U|U|297
6TNN|1|U|G|298
6TNN|1|U|U|299
6TNN|1|U|A|300
*
6TNN|1|U|U|414
6TNN|1|U|G|415

Current chains

Chain U

pre-23S rRNA

Nearby chains