J3_6TNN_004
3D structure
- PDB id
- 6TNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- UGAUCUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 6TNN|1|U|U|731, 6TNN|1|U|G|837, 6TNN|1|U|A|838
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6TNN_004 not in the Motif Atlas
- Homologous match to J3_5J7L_038
- Geometric discrepancy: 0.1401
- The information below is about J3_5J7L_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64189.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6TNN|1|U|U|728
6TNN|1|U|G|729
6TNN|1|U|A|730
6TNN|1|U|U|731
6TNN|1|U|C|732
6TNN|1|U|U|733
6TNN|1|U|A|734
*
6TNN|1|U|U|818
6TNN|1|U|A|819
6TNN|1|U|G|820
*
6TNN|1|U|C|836
6TNN|1|U|G|837
6TNN|1|U|A|838
6TNN|1|U|A|839
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain W
- 50S ribosomal protein L2
- Chain r
- 50S ribosomal protein L34
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