J3_6TNU_033

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

6TNU|1|2|U|227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TNU|1|2|A|213
6TNU|1|2|G|214
6TNU|1|2|A|215
6TNU|1|2|U|216
6TNU|1|2|A|217
6TNU|1|2|A|218
6TNU|1|2|A|219
6TNU|1|2|A|220
6TNU|1|2|A|221
6TNU|1|2|A|222
6TNU|1|2|U|223
6TNU|1|2|C|224
6TNU|1|2|A|225
6TNU|1|2|A|226
6TNU|1|2|U|227
6TNU|1|2|G|228
*
6TNU|1|2|C|237
6TNU|1|2|U|238
6TNU|1|2|C|239
6TNU|1|2|U|240
6TNU|1|2|U|241
6TNU|1|2|U|242
6TNU|1|2|G|243
*
6TNU|1|2|C|250
6TNU|1|2|A|251
6TNU|1|2|U|252

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain T

40S ribosomal protein S6-A

Chain X

40S ribosomal protein S11-A