J3_6TPQ_002
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- ACGGGACGAACA*UGC*GAUUU
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6TPQ_002 not in the Motif Atlas
- Homologous match to J3_4WF9_001
- Geometric discrepancy: 0.3061
- The information below is about J3_4WF9_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47707.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-cWW-F-F-cSH-cSH-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6TPQ|1|U|A|54
6TPQ|1|U|C|55
6TPQ|1|U|G|56
6TPQ|1|U|G|57
6TPQ|1|U|G|58
6TPQ|1|U|A|59
6TPQ|1|U|C|60
6TPQ|1|U|G|61
6TPQ|1|U|A|62
6TPQ|1|U|A|63
6TPQ|1|U|C|64
6TPQ|1|U|A|65
*
6TPQ|1|U|U|72
6TPQ|1|U|G|73
6TPQ|1|U|C|74
*
6TPQ|1|U|G|107
6TPQ|1|U|A|108
6TPQ|1|U|U|109
6TPQ|1|U|U|110
6TPQ|1|U|U|111
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain m
- 50S ribosomal protein L23
- Chain r
- 50S ribosomal protein L34
- Chain v
- 50S ribosomal protein L29
Coloring options: