J3_6TPQ_003

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

6TPQ|1|U|U|299

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TPQ_003 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.1752

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6TPQ|1|U|C|270
6TPQ|1|U|A|271
6TPQ|1|U|A|272
6TPQ|1|U|A|273
6TPQ|1|U|C|274
*
6TPQ|1|U|G|293
6TPQ|1|U|G|294
6TPQ|1|U|G|295
6TPQ|1|U|U|296
6TPQ|1|U|U|297
6TPQ|1|U|G|298
6TPQ|1|U|U|299
6TPQ|1|U|A|300
*
6TPQ|1|U|U|414
6TPQ|1|U|G|415

Current chains

Chain U

pre-23S rRNA

Nearby chains