J3_6TPQ_013
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- CC*GUUGAU*AAUCG
- Length
- 13 nucleotides
- Bulged bases
- 6TPQ|1|U|U|2856, 6TPQ|1|U|A|2858
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6TPQ_013 not in the Motif Atlas
- Homologous match to J3_7RQB_014
- Geometric discrepancy: 0.2071
- The information below is about J3_7RQB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_95952.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6TPQ|1|U|C|2837
6TPQ|1|U|C|2838
*
6TPQ|1|U|G|2854
6TPQ|1|U|U|2855
6TPQ|1|U|U|2856
6TPQ|1|U|G|2857
6TPQ|1|U|A|2858
6TPQ|1|U|U|2859
*
6TPQ|1|U|A|2905
6TPQ|1|U|A|2906
6TPQ|1|U|U|2907
6TPQ|1|U|C|2908
6TPQ|1|U|G|2909
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain X
- 50S ribosomal protein L3
- Chain g
- 50S ribosomal protein L17
- Chain p
- 50S ribosomal protein L32
Coloring options: